Bootstrap_P_Barplot — Bootstrap_P

This bar plot shows the -log2(p value) for bootstrap result, using the ggplot packages

Usage

Bootstrap_P_Barplot(
  p_results,
  p_names,
  title = "Test scPagwas",
  figurenames = NULL,
  width = 5,
  height = 7,
  do_plot = TRUE
)

Arguments

p_results: vector p results
p_names: names for p
title: The title names of the plot
figurenames: The filename and address of the output plot, default is "test_barplot.pdf".IF figurenames= NULL, only plot the figure and have not pdf figure.
width: figure width, default is 5
height: figure height,default is 7
do_plot: whether to plot the plot.

Value

A figure of barplot in pdf format, red color is significant.

Author

Chunyu Deng

Examples

library(scPagwas)
load(system.file("extdata", "Pagwas_data.RData", package = "scPagwas"))

Bootstrap_P_Barplot(
  p_results = Pagwas_data@misc$bootstrap_results$bp_value[-1],
  p_names = rownames(Pagwas_data@misc$bootstrap_results)[-1],
  width = 5,
  height = 7,
  do_plot = TRUE,
  title = "Test"
)