Function reference
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Boot_evaluate() - Boot_evaluate
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Bootstrap_P_Barplot() - Bootstrap_P_Barplot
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Bootstrap_estimate_Plot() - Bootstrap_estimate_Plot
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Corr_Random() - Corr_Random Split the large-scale single-cell data and perform random computations of correlation. Multiple iterations of random computations ensure the accuracy of the results.
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GWAS_summary_input() - GWAS_summary_input
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Genes_by_pathway_kegg - Genes_by_pathway_kegg
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Get_CorrectBg_p() - Get_CorrectBg_p
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Get_Pathway_heritability_contributions() - Get_Pathway_heritability_contributions
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Get_bootresults_df() - Get_bootresults_df
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Link_pathway_blocks_gwas() - Link_pathway_blocks_gwas
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Merge_celltype_p() - Merge_celltype_p
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Merge_gPas() - Merge_gPas
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Pagwas_perform_regression() - Pagwas_perform_regression
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Parameter_regression() - Parameter_regression
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PathwayPCAtest() - PathwayPCAtest
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Pathway_annotation_input() - Pathway_annotation_input
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Pathway_block_func() - Pathway_block_func
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Pathway_pcascore_run() - Pathway_pcascore_run
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Single_data_input() - Single_data_input
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SnpToGene() - Functions for mapping Snps to Genes
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as_matrix() - Convert a large sparse matrix into a dense matrix without errors
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bh.adjust() - bh.adjust
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block_annotation - block_annotation
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block_annotation_hg37 - block_annotation_hg37
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chrom_ld - chrom_ld
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corSparse() - various association measures between sparse matrices
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correct_background() - correct_background
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fortify(<Seurat.tsne>) - fortify.Seurat.tsne
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fortify(<Seurat.umap>) - fortify.Seurat.umap
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genes.by.celltype.pathway - genes.by.celltype.pathway
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genes.by.gobp.pathway - genes.by.gobp.pathway
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genes.by.hallmark.pathway - genes.by.hallmark.pathway
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genes.by.reactome.pathway - genes.by.reactome.pathway
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genes.by.regulatory.pathway - genes.by.regulatory.pathway
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genes.by.tft.pathway - genes.by.tft.pathway
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get_Pathway_sclm() - get_Pathway_sclm
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get_p_from_empi_null() - get_p_from_empi_null
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heritability_cor_scatterplot() - heritability_cor_scatterplot
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lfdr() - Estimate local False Discovery Rate (FDR)
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link_pwpca_block() - link_pwpca_block
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make_ld_matrix() - make_ld_matrix
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p_merge() - p_merge
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pa_meanexpr() - pa_meanexpr
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pi0est() - Proportion of true null p-values
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plot_bar_positie_nagtive() - plot_bar_positie_nagtive
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plot_vln_Corgenes() - plot_vln_Corgenes
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qvalue() - Estimate the q-values for a given set of p-values
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reduce_pathway() - reduce_pathway
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scCount_data_input() - scCount_data_input
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scGene_rankP() - scGene_rankP
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scGene_scaleP() - scGene_scaleP
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scGet_PCC() - scGet_PCC
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scPagwas_Visualization() - scPagwas_Visualization
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scPagwas_main() - Main wrapper functions for scPagwas
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scPagwas_perform_score() - scPagwas_perform_score
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scPagwas_score_filter() - scPagwas_score_filter
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scParameter_regression() - scParameter_regression
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umap_theme() - umap_theme
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xy2vector() - xy2vector