heritability_cor_scatterplot — heritability_cor

Plot the scatterplot for the pearson correlation coefficients(PCC) for each genes. pearson methods for each gene expression and gPAS score in each cells.

Usage

heritability_cor_scatterplot(
  gene_heri_cor = NULL,
  topn_genes_label = 10,
  color_low = "#035397",
  color_high = "#F32424",
  color_mid = "white",
  text_size = 3,
  do_plot = TRUE,
  max.overlaps = 10,
  figurenames = NULL,
  width = 7,
  height = 7
)

Arguments

gene_heri_cor: PCC result for scPagwas.
topn_genes_label: 10, the number of top genes for correlation.
color_low: low color
color_high: high color
color_mid: mid color
text_size: text size
do_plot: parametr for "geom_label_repel", Exclude text labels that overlap too many things. Defaults to 10.
max.overlaps: mac over
figurenames: The filename and address of the output plot
width: figure width
height: figure height

Value

scatterplot

Author

Chunyu Deng

Examples

load(system.file("extdata", "Pagwas_data.RData", package = "scPagwas"))
heritability_cor_scatterplot(
  gene_heri_cor = Pagwas_data@misc$PCC,
  topn_genes_label = 10,
  color_low = "#035397",
  color_high = "#F32424",
  color_mid = "white",
  text_size = 2,
  do_plot = TRUE,
  max.overlaps = 20,
  width = 7,
  height = 7
)
#> Error in rep(NA, nrow(gene_heri_cor)): invalid 'times' argument