Link_pathway_blocks_gwas

Link pathway blocks region and gwas summary snps Takes block information, potentially independent LD pathway_blocks or gene blocks,

Usage

Link_pathway_blocks_gwas(
  Pagwas,
  chrom_ld = NULL,
  singlecell = T,
  celltype = T,
  backingpath,
  n.cores = 1
)

Arguments

Pagwas

Pagwas format, deault is NULL.

chrom_ld

LD data for 22 chromosome.

singlecell

whether to run singlecell progress

celltype

whether to run celltype progress

backingpath

file address for bk files, no "/" in the end.

n.cores

cores for regression

Value

Pagwas list of blocks for snp to gene and pathway score.

Author

Chunyu Deng